MS Minkara, OA Erickson, RB Cole, JM Isaacs…

Science Advances, 2023

Minkara, M.; Koone, J.C.; Dashnaw, C.M.; Alonzo, E.; Iglesias, M.A.;Patero, K.S.; Lopez, J.; Zhang, S.Y.; Zechmann, B.; Cook, N. …

Science Advances, 2022

OA Erickson, RB Cole, JM Isaacs, S Alvarez-Clare…

CBE Life Sciences Education, 2022

Greenvall, B.R., Tiano, A.L., Chandani, A. et al. The Influence of a Blind Professor in a Bioengineering Course.

Biomed Eng Education 1, 245–258 (2021).

Josephson, T. R.; Singh, R.; Minkara, M. S.; Fetisov, E. O.; Siepmann, J. I. Partial molar properties from molecular simulation using multiple linear regression

Mol. Phys. 2019, 117, 3589.

Minkara, M. S.; Hembree, R. H.; Jamadagni, S. N.; Ghobadi, A. F.; Eike, D. M.; Siepmann, J. I. A New Equation of State for Homo-polymers in Dissipative Particle Dynamics.

J. Chem. Phys. 2019, 150, 124104.

Minkara, M. S.; Lindsey, R. K.; Hembree, R. H.; Venteicher, C. L.; Jamadagni, S. N.; Eike, D. M.; Ghobadi, A. F.; Koenig, P. H.; Siepmann, J. I. Probing Additive Loading in the Lamellar Phase of a Nonionic Surfactant: Gibbs Ensemble Monte Carlo Simulations using the SDK Force Field.

Langmuir 2018, 34, 8245.

Minkara, M. S.; Josephson, T.; Venteicher, C. L.; Chen, J. L.; Stein, D. J.; Peters, C. J.; Siepmann, J. I. Monte Carlo Simulations Probing the Liquid/Vapor Interface of Water/Hexane Mixtures: Adsorption Thermodynamics, Hydrophobic Effect, and Structural Analysis.

Mol. Phys. 2018, 116, 3283.

Minkara, M. S.; Weaver, M. N.; Merz, K. M. Jr. Effect of 10.5 M Aqueous Urea on Helicobacter pylori Urease: A Molecular Dynamics Study.

Biochemistry 2015, 54, 4121.

Minkara, M. S.; Weaver, M. N.; Gorske, J.; Bowers, C. R.; Merz, K. M. Jr. Implementation of Protocols to Enable Doctoral Training in Physical and Computational Chemistry of a Blind Graduate Student.

J.Chem. Educ. 2015, 92, 1280.

Macomber, L.; Minkara, M. S.; Hausinger, R.P.; Merz, K. M. Jr. Reduction of Urease Activity by Interaction with the Flap Covering Active Site.

J. Chem. Inf. Model. 2015, 55, 354.

Minkara, M. S.; Ucisik, M. N.; Weaver, M. N.; Merz, K. M. Jr. Molecular Dynamics Study of Helicobacter pylori Urease.

J. Chem. Theory Comput. 2014, 10, 1852.


Kreienkamp, A. B.; Liu, L. Y.; Minkara, M. S.; Knepley, M. G.; Bardhan, J. P.; Radhakrishnan, M. L. Analysis of fast boundary-integral approximations for modeling electrostatic contributions of molecular binding.

Mol. Based Math. Biol. 2013, 1, 124.

Minkara, M. S.; Davis, P. H.; Radhakrishnan; M. L. Multiple Drugs and Multiple Targets: An Analysis of the Electrostatic Determinants of Binding Between Non-nucleoside HIV-1 Reverse Transcriptase Inhibitors and Variants of HIV-1 RT.

Proteins 2012, 80, 573.


Minkara, M. S.; Design of a Novel Inhibitor for Helicobacter pylori Urease.

Thesis. University of Florida, 2015. Gainesville: 2015. UFDC. Web.

Minkara, M. S.; Analyzing the Binding of Nevirapine and Rilpivirine to HIV-1 Reverse Transcriptase through Computationally Derived Charge Optimization.

Thesis. Wellesley College, 2009. Wellesley: 2009. WCDC. Web.